This is a list of online databases that publish funding opportunities.
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uniprot
http://www.uniprot.org/ blast http://blast.ncbi.nlm.nih.gov/Blast.cgi ClustalW2 http://www.ebi.ac.uk/Tools/msa/clustalw2/ PROMALS3D multiple sequence and structure alignment server http://prodata.swmed.edu/promals3d/promals3d.php I-tassar http://zhanglab.ccmb.med.umich.edu/I-TASSER/ SWISS-MODEL http://swissmodel.expasy.org/ HHpred - Homology detection & structure prediction by HMM-HMM comparison http://toolkit.tuebingen.mpg.de/hhpred robetta http://robetta.bakerlab.org/ Protein Structure Prediction Center http://predictioncenter.org/ MODELLER https://salilab.org/modeller/ Pfam http://pfam.xfam.org/ http://pfam.xfam.org/family/pf00562#tabview=tab7 SwissDock http://www.swissdock.ch/ CAPRI: Critical Assessment of PRediction of Interactions http://www.ebi.ac.uk/msd-srv/capri/ HADDOCK http://www.nmr.chem.uu.nl/haddock2.1/ (If you found it useful, please share and comment on the post. :-) )
(If you found it useful, please share and comment on the post. :-) ) How to install:
gnome sudo apt-get install gnome sublime-text-2 sudo -i add-apt-repository ppa:webupd8team/sublime-text-2 apt-get update gromacs sudo apt-get install gromacs g++ sudo apt-get install g++ vmd download latest release from official source tar -zxvf vmd-1.9.1.bin.LINUXAMD64.opengl.tar.gz cd vmd-1.9.1 ./configure LINUXAMD64 (use other option for different OS) ./configure cd src make install alias required tcsh sudo apt-get install tcsh csh sudo apt-get install csh Fortran sudo apt-get install gfortran Ambertools download latest release from official source untar in the location in which you wish to install the program tar jxvf AmberTools12.tar.bz2 cd amber12 export AMBERHOME=`pwd` ./patch_amber.py --update-tree sudo apt-get install xorg-dev sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-get install flex sudo apt-get install build-essential ./configure gnu (additional arguments may be required) make install make test (to test installation) edit .bashrc export AMBERHOME=/path/to/amber12 export PATH=$PATH\:$AMBERHOME/bin namd download latest release from official source is already ready to run alias required Openbabel sudo apt-get install openbabel download python-openbabel with Synaptics Package Manager download python-babel with Synaptics Package Manager download python-pybabel with Synaptics Package Manager Avogadro sudo apt-get install avogadro cmake sudo apt-get install cmake ipython sudo apt-get install ipython kate sudo apt-get install kate kwrite sudo apt-get install kwrite eclipse sudo apt-get install eclipse geany sudo apt-get install geany Chimera download latest release from official source ./chimera-1.7-linux_x86_64.bin alias required Django download latest release from official source tar xzvf Django-1.5.tar.gz cd Django-1.5 sudo python setup.py install alias required vim sudo apt-get install vim svn sudo apt-get install subversion gcj download gcj-4.6-jdk with Synaptics Package Manager download gcj-4.7-jdkl with Synaptics Package Manager download gcj-jdk with Synaptics Package Manager acpype go to the directory in which you wish to install the program svn checkout http://acpype.googlecode.com/svn/trunk acpype ln -s $PWD/acpype.py /usr/local/bin/acpype marvinsketch download latest release from official source sh marvinbeans-VERSION-linux.sh alias required pip for python curl -O https://raw.github.com/pypa/pip/master/contrib/get-pip.py python get-pip.py Install the programs in the order shown to avoid any errors involving missing packages !!! (If you found it useful, please share and comment on the post. :-) ) |
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December 2017
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